PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC233912.1_FGP001
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 146aa    MW: 17195.9 Da    PI: 9.8997
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC233912.1_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.7e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskRr g++KKA+E+ +LCda++ viifs +g++yeyss
  AC233912.1_FGP001  9 KKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSS 59
                       68***********************************************96 PP
2K-box41.84.5e-15851441473
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                        +++  qe++++++e + L+    +++ edL s s+++L +Leqq+e sl k+R +K+ell
  AC233912.1_FGP001  85 QQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELL 144
                        68999*****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.922161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-29279IPR002100Transcription factor, MADS-box
CDDcd002659.22E-37276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1281144IPR002487Transcription factor, K-box
PROSITE profilePS5129710.37285146IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANEVAILCD AQIGVIIFSG SGRMYEYSSP  60
PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMNDERN RLRMIMAQYM AEDLASFSVQ  120
DLSNLEQQIE FSLYKVRLRK QELLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-16160160Myocyte-specific enhancer factor 2B
1tqe_Q1e-16160160Myocyte-specific enhancer factor 2B
1tqe_R1e-16160160Myocyte-specific enhancer factor 2B
1tqe_S1e-16160160Myocyte-specific enhancer factor 2B
6byy_A1e-16160160MEF2 CHIMERA
6byy_B1e-16160160MEF2 CHIMERA
6byy_C1e-16160160MEF2 CHIMERA
6byy_D1e-16160160MEF2 CHIMERA
6bz1_A1e-16160160MEF2 CHIMERA
6bz1_B1e-16160160MEF2 CHIMERA
6bz1_C1e-16160160MEF2 CHIMERA
6bz1_D1e-16160160MEF2 CHIMERA
6c9l_A1e-16160160Myocyte-specific enhancer factor 2B
6c9l_B1e-16160160Myocyte-specific enhancer factor 2B
6c9l_C1e-16160160Myocyte-specific enhancer factor 2B
6c9l_D1e-16160160Myocyte-specific enhancer factor 2B
6c9l_E1e-16160160Myocyte-specific enhancer factor 2B
6c9l_F1e-16160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120010.0meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC233912.1_FG001
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC233912.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9754250.0EU975425.1 Zea mays clone 490157 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652193.11e-105MADS-box transcription factor 31
SwissprotQ84NC23e-89MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A1D6HRZ71e-100A0A1D6HRZ7_MAIZE; Protein TRANSPARENT TESTA 16
STRINGAC233912.1_FGP0011e-104(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]