PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC233943.1_FGP002
Common NameLOB6, ra2
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 261aa    MW: 26781.3 Da    PI: 7.7978
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC233943.1_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.62.5e-44301291100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++
  AC233943.1_FGP002  30 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQK 121
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        el+++++e
  AC233943.1_FGP002 122 ELDAAHAE 129
                        ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.3929130IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4330127IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MASPSSTSNN SAFSPVAASA GTTMPGAGAP CAACKFLRRK CLPGCVFAPY FPPEEPQKFA  60
NVHKVFGASN VTKLLNELLP HQREDAVSSL AYEAEARVKD PVYGCVGAIS VLQRQVHRLQ  120
KELDAAHAEL LRYACGDVAA GIPTALPVVS AAPRLSTAPM TTTSPGQFAA GMYGSGRRLG  180
VVDGLAAPPL PPSGGGGGCY FMRNHHNNVV ISSSPGADVA PVLPYASVAN WAVNAISAST  240
TTTSGSESIG LDHKEGGDSS M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-84201511131LOB family transfactor Ramosa2.1
5ly0_B3e-84201511131LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.266630.0ear| glume| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC233943.1_FG002
Function -- GeneRIF ? help Back to Top
  1. Encodes a LATERAL ORGAN BOUNDARY Domain Protein That Determines the Fate of Stem Cells in Branch Meristems of Maize
    [PMID: 16399802]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC233943.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0355380.0BT035538.1 Zea mays full-length cDNA clone ZM_BFb0068K20 mRNA, complete cds.
GenBankDQ3277010.0DQ327701.1 Zea mays ramosa 2 (ra2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131918.10.0ramosa 2
RefseqXP_008672130.10.0ramosa 2 isoform X1
TrEMBLA0A3L6FL260.0A0A3L6FL26_MAIZE; Protein LATERAL ORGAN BOUNDARIES
TrEMBLQ27YF30.0Q27YF3_MAIZE; LOB transcription factor
STRINGAC233943.1_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88133545
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-69LBD family protein
Publications ? help Back to Top
  1. Bortiri E, et al.
    ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize.
    Plant Cell, 2006. 18(3): p. 574-85
    [PMID:16399802]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]