PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC234185.1_FGP006
Common NameLOC103635357, ZEAMMB73_564612
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 248aa    MW: 25460.7 Da    PI: 8.8008
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC234185.1_FGP006genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.6e-221865249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       rie++  rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + +
  AC234185.1_FGP006 18 RIESDEARQVCFSKRRAGLFKKASELSILCGADVAAVVFSPAGKAFSF 65
                       8******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.717969IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-35968IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-29981IPR002100Transcription factor, MADS-box
CDDcd002654.86E-411084No hitNo description
PRINTSPR004043.7E-201131IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAPPRRPSMG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCGAD VAAVVFSPAG  60
KAFSFGHPSV ESVVERFLAS SSPSPAGAGA GHSASGGEDR AVSELNRQHG ELRAQLDAVK  120
ARQERADEAI RKEREAGSPA MAWIDAELSG GAMGHDDLVA FWAALAGVQA AVAASADRLL  180
RDALLVGRRG RQQQQPAQLA GGGGVAFDVG AFGGVGVQVQ PPPGFAGVVD LQGFGGQAAA  240
ILGAGGPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17990182MEF2 CHIMERA
6byy_B1e-17990182MEF2 CHIMERA
6byy_C1e-17990182MEF2 CHIMERA
6byy_D1e-17990182MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1258270.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC234185.1_FG006
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC234185.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626540.0EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306659.11e-172agamous-like MADS-box protein AGL61
TrEMBLA0A3L6DUS91e-170A0A3L6DUS9_MAIZE; Agamous-like MADS-box protein AGL62
TrEMBLB6TCD91e-170B6TCD9_MAIZE; DNA binding protein
STRINGAC234185.1_FGP0061e-171(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-29AGAMOUS-like 62
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]