PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC234520.1_FGP003
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 186aa    MW: 19591.4 Da    PI: 9.9749
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC234520.1_FGP003genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-314095156
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
                       k+r++W+p LH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  AC234520.1_FGP003 40 KARRCWSPGLHRRFVAALQRLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 95
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9633797IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-283798IPR009057Homeodomain-like
SuperFamilySSF466891.12E-163798IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-264095IPR006447Myb domain, plants
PfamPF002497.8E-64293IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MPVADLSLSS PAAAASPSAA SSAVTDAAGA HRRQHAQQRK ARRCWSPGLH RRFVAALQRL  60
GGAQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRAS SDGGDQHAGG LWSSAPEQQY  120
TTSQHSTSQS QSQSGSPQGP LQLAVSSRAM SATAGDSCDA GDEAQGGRSE SYGWEMPQHG  180
TKASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-134093154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-134093154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-134093154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-134093154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.240180.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC234520.1_FG003
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC234520.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616585e-50AY661658.1 Sorghum bicolor clone BAC 796all, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661501.11e-129transcription factor HHO6
SwissprotQ9FX841e-35HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A1D6KET41e-128A0A1D6KET4_MAIZE; Homeodomain-like superfamily protein
STRINGAC234520.1_FGP0031e-130(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.16e-32G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]