PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC234521.1_FGP006
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 255aa    MW: 27713.5 Da    PI: 11.2836
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC234521.1_FGP006genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP66.49.9e-211642272
                TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssase 72
                       + ls+ +a++fF+Lqd+LGfdk+skt++WLl q+kpai+ l++               + ++++
  AC234521.1_FGP006  1 MQLSVGVAREFFALQDRLGFDKASKTVNWLLAQSKPAIDRLNRArlgserqfvappnRTRPEQF 64
                       689****************************************977666666555542222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-16157IPR005333Transcription factor, TCP
PROSITE profilePS5136922.929141IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQLSVGVARE FFALQDRLGF DKASKTVNWL LAQSKPAIDR LNRARLGSER QFVAPPNRTR  60
PEQFVAPRSL SKRAVSAEEE VAGVAARKGC VRQIGGDADE TKKVTFVEVG GDVPLKLSRR  120
NSLAAHVPMT WSRRNSLGAD VLVRQSSRNS LCAEAQDCEL RSQVTCSPVV AKPRGKSAQA  180
GSVEVGAVVP LRRSRRNSLR AAESEEVQVA VFVDRKRKCK NQENDKGVAL SAQVGASSRV  240
TRRSSHALSS LKPGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.398043e-61tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC234521.1_FG006
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC234521.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573209e-77AC157320.2 Zea mays clone ZMMBBb-7C14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401272.11e-81uncharacterized protein LOC103640817 isoform X3
TrEMBLA0A1D6E4L51e-165A0A1D6E4L5_MAIZE; Uncharacterized protein
STRINGAC234521.1_FGP0060.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-12TCP family protein