PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AF546187.1_FGP012
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 215aa    MW: 22418.9 Da    PI: 6.507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AF546187.1_FGP012genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069104126123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F++   L  H  +H
  AF546187.1_FGP012 104 HACSVCGKAFPSYQALGGHKASH 126
                        67**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-5102128No hitNo description
PfamPF139122.3E-13104128IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAVLDAAVTP SPSGRADAAA ADQVATTSGC GGRAAEEAEA VLLQQEHDGQ GRAKRKRSRR  60
RRDRDGQQPK EPTTQEEYLA LCLVMLATGR RDADADAAVP PQDHACSVCG KAFPSYQALG  120
GHKASHRAKP SPSPSPAAAL APEPGAEDGD RHDEKKPAQP SSSSAGSRPA AAAHECNAVA  180
FDLNLPALPD RCAGVDEDEV LSPLAFKKPR FMIPA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.353810.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAF546187.1_FG012
Cis-element ? help Back to Top
SourceLink
PlantRegMapAF546187.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557420.0EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147538.25e-79zinc-finger protein 1
TrEMBLA0A1D6KEN81e-77A0A1D6KEN8_MAIZE; Zinc finger protein AZF2
STRINGAF546187.1_FGP0121e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-14C2H2 family protein