PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000051-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 261aa    MW: 30041.8 Da    PI: 8.7102
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000051-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.21.3e-33271182102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y +++d+e++ +isw+e g++fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv +++         weF+++ F++gk+ell 
  AHYPO_000051-RA  27 FLLKTYMLVDDPETDPIISWNEGGTAFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVATSR---------WEFSNNMFQQGKRELLG 111
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  AHYPO_000051-RA 112 QIRRRKA 118
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3522116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5123116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3224116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEGIMCEKGG VGLLEYEIVR KQNSAPFLLK TYMLVDDPET DPIISWNEGG TAFVVWQPAE  60
FARDLLPTLF KHCNFSSFVR QLNTYGFRKV ATSRWEFSNN MFQQGKRELL GQIRRRKAWT  120
HRQQPLTTVA PPTLKQTSSE APTSNQDEDQ RSSSSSSSTE LNNLVHENKR LKEENGVLSS  180
ELITMKNKCK ELFDLVAIYA NRKENCHNNN DDDNDDNREK QLKLFGVKLE VQGQRETKRK  240
RKRSEEVYDT ARILLSQSCK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-202311616120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021741009.11e-132heat stress transcription factor B-3-like
SwissprotO222301e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2N9IBC95e-95A0A2N9IBC9_FAGSY; Uncharacterized protein
TrEMBLA0A438JKZ08e-95A0A438JKZ0_VITVI; Heat stress transcription factor B-3
TrEMBLF6HKV68e-95F6HKV6_VITVI; Uncharacterized protein
STRINGXP_010672866.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-66heat shock transcription factor B3