PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000053-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 423aa    MW: 46644.1 Da    PI: 9.8196
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000053-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1374130155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  AHYPO_000053-RA  74 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 130
                      57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1574139IPR016177DNA-binding domain
PfamPF008476.0E-974130IPR001471AP2/ERF domain
PROSITE profilePS5103218.51875138IPR001471AP2/ERF domain
SMARTSM003801.1E-1975144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1275139IPR001471AP2/ERF domain
PRINTSPR003674.2E-57687IPR001471AP2/ERF domain
PRINTSPR003674.2E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MASTSSGDVN GGAEGVLTVK MTASATTSVN VGVSKNKENS ENSVILMKKV KRERGSTAKD  60
RISKMPPTAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYSRDLDEMQ NVSREDYLAS LRRKSSGFSR GIAKYRALSS  180
GRWEPSLGRA TATEYHRGIH YGKGEDIPAE GDYPGGFPME RKIDLTGHIK WWGPNKIRQS  240
EVGKHTSSDE FGTELKSLER EVQSTEPYQM PKLGTSYEAK KNKGSATSAL SILSRSAAYK  300
NMQEKASKAK EAMNDNDEKE NKSNISKIDS GKAVQKTSDD DAIDRLGSTL GIGGLPLHKN  360
VFPLTQLLNA PLLTNYNTID PLTDPILWTS LMPVLPTATS RTSEVTKTET SSTYSFFRQE  420
EG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021741005.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-143AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0K9QD460.0A0A0K9QD46_SPIOL; Uncharacterized protein
STRINGXP_010672391.10.0(Beta vulgaris)
STRINGXP_010672863.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-130AP2 family protein