PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000087-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 600aa    MW: 67371.3 Da    PI: 7.8463
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000087-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.4e-10535590147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      + +WT+eE++ l ++v+ + +g      Wk I ++ g     gRt+ ++k++w+++
  AHYPO_000087-RA 535 KVPWTAEEEDMLMKGVNIFAKGdgrvvPWKVILQCGGsvfqPGRTAVDLKDKWRNL 590
                      579***************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.1E-9274326IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.66E-10275325IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500169.063276324IPR019787Zinc finger, PHD-finger
SMARTSM002491.6E-6278322IPR001965Zinc finger, PHD-type
PROSITE patternPS013590279321IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.352530591IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-11531596IPR009057Homeodomain-like
SuperFamilySSF466894.26E-11532592IPR009057Homeodomain-like
SMARTSM007171.6E-6534593IPR001005SANT/Myb domain
PfamPF002496.3E-7535590IPR001005SANT/Myb domain
CDDcd116601.44E-11536592No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MEKVVSDSAL PWSWVIEALA KSQLVDASLL YELLSKVPPL LGNSGKQAKE AAALRCLEEH  60
FGRNLSSENH DVCDESKVRF DPAESCETAL RHMTSCFEGA PNEVKWDIRS FINHKKASLP  120
KSTLELLKDT ISEGTHPIVA SLKQNFERDI LDQCFLNIPL NDNQCPPAKK RKMNSECGIR  180
SKQQHSVAVG SNQMCKDTKD GHLHEVTNYK VNKKTFEKDD EQTKTYVENH DQQSISPNIS  240
DRCCHEEIDL EMKSPNFLSS LSDFTRDFLA MTETQPNICM KCNKDGQLLS CSGSCSLMFH  300
ESCLGCSASF DDQGKFYCPF CTYSRAISEY VRAKEKVNST RKELSRFIVG RTFDRPQHDG  360
NTLSGGNVNQ DRQMNADQTT KVKDGANNVA QLTDPHQSNL KGKQFDLLHS SACLDTNRLV  420
LATSQHISSE DRKGAEIVTH HVRGPSGIWN YRKDDRCCDG ATFSGNIEQF LDGTLKLLEL  480
KRKKDTRCRI AKLRGDASHE SICNLDELTQ DERNCRTISL LSPIPLRAIP ARRKKVPWTA  540
EEEDMLMKGV NIFAKGDGRV VPWKVILQCG GSVFQPGRTA VDLKDKWRNL SRKMAAKQT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724094.11e-151uncharacterized protein LOC110691462
TrEMBLA0A0K9RT571e-141A0A0K9RT57_SPIOL; Uncharacterized protein
STRINGXP_010672769.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-06MYB_related family protein