PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000115-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 337aa    MW: 37567.8 Da    PI: 9.4117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000115-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13274319655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR+ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  AHYPO_000115-RA 274 SIAERMRRNRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKNLQ 319
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.307268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16271330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-12272321No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14273327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-13274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDSYMETQFL NHNHQPQQHQ NSGLLRFRSA PSSLFNEFTQ NSSDSGKFNG RISDEFVESY  60
EKKPQRLDSL TGFLSSPQMV GCEQSNTPNT QLNLPPQYPK QNHVTISSSM ETSNSMRHGS  120
CGLNLNRQNS SPAGFFNQLN TQNGYTIMRG LGNFRVGNGV NGESSPRTSR LNTSHLPRIP  180
ELGNENVKDS RSDGDAGFDS SPAGYSFVSW NDSTSDASRL SENSGLSNRP ALSHHMSLPK  240
TSAEMAAVEK LLHFQDVVPC KVRAKRGCAT HPRSIAERMR RNRISERMRK LQELVPNMDK  300
QTNTADMLDL AVDYIKNLQN QYKVLSDGRA KCKCVR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724045.11e-165transcription factor bHLH130-like
TrEMBLA0A0K9QVG31e-160A0A0K9QVG3_SPIOL; Uncharacterized protein
STRINGXP_010672727.11e-145(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-61bHLH family protein