PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000118-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 429aa    MW: 47612.5 Da    PI: 6.4081
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000118-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.4e-3251106155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 
                      kprl+Wt++LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQ kYRl
  AHYPO_000118-RA  51 KPRLKWTHDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQqKYRL 106
                      79************************************************649**8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.13748108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2949107IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1450106IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-2151107IPR006447Myb domain, plants
PfamPF002496.9E-853102IPR001005SANT/Myb domain
PfamPF143797.2E-11151173IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF143791.9E-7214235IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MMIFKTGRVP SPNQATMFSS PRMSAPQERQ LFLQGGNGSR DSNLVLSTDA KPRLKWTHDL  60
HERFVEAVNQ LGGADKATPK TVMKLMGIPG LTLYHLKSHL QQKYRLSKNI HGQTTGGPNK  120
AVVMSAEKMP EPNPSNTSSI NITHQPNKNL HINEALQMQI EVQRRLHEQL EVHDPVYFQF  180
KQNGLSPKAD TTTAAQNLQR HHPMNSHDKD VGRLQLRIEA QGKYLQSVLE KAEETLGKQN  240
IGVVGLEAAK LQLSELVSTV SNQCLNLALA EMAEEQQGIT PKQQIQPHKL MGNCSIDSCL  300
TSCDGIQQRE PDMQNSELGL RPYNDSEFLK GNDDSENIKD HANLLFPTTT QQDTGKMMFP  360
VEGACNDLSM SVGIGGDTRD ELEKNAFQHD NLNYKLSSFS GDLDLNTQDE PDASTSIRHL  420
DLNGLSWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1950108158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1950108158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1951108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1951108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1951108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1951108157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1950108158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1950108158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1950108158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1950108158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1950108158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1950108158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672720.10.0PREDICTED: myb-related protein 2-like isoform X1
RefseqXP_010672724.10.0PREDICTED: myb-related protein 2-like isoform X1
TrEMBLA0A0K9RSG60.0A0A0K9RSG6_SPIOL; Uncharacterized protein
STRINGXP_010672720.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-102G2-like family protein