PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000139-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 377aa    MW: 40588 Da    PI: 8.8738
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000139-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.22.4e-4375150176
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      +CqvegC++dls+ak y++rhkvC++hsk+p v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  AHYPO_000139-RA  75 RCQVEGCKVDLSDAKPYYSRHKVCSMHSKSPLVIVNGLEQRFCQQCSRFHRLPEFDQGKRSCRRRLAGHNERRRKP 150
                      6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3471137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.56573150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-4174154IPR004333Transcription factor, SBP-box
PfamPF031108.0E-3376149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDTTTSKYQT FVEGSSKTKP LSSSGLSDSL NGLKFGQKIY FEDVGGTSLG KSCSSSSISS  60
KKGGKGVLQS GLPPRCQVEG CKVDLSDAKP YYSRHKVCSM HSKSPLVIVN GLEQRFCQQC  120
SRFHRLPEFD QGKRSCRRRL AGHNERRRKP PPGSLLSSRL GRLSSSLFDD KTNRSGGFLL  180
DFTSYSRDSK TDLWLGYNTS EQVSGIHSRS NMWPGNSIDP SSKVFPQGSA SGNVFSFPSG  240
ECNTGVSSDS SCALSLLSNQ NWSSGNRASD TGLGNLMNID GVAVSQCPAA HTVTVAHLPS  300
SSSLWGFKGN NDPNCGLHAV PSGHPGLGQT SQPHFSGQFH GDLMMEQVPD GGRHYMDVEH  360
SRVYDSTTSN HVNWSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3070149684squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724004.11e-171squamosa promoter-binding-like protein 17 isoform X2
SwissprotA3C0571e-61SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0K9QU541e-158A0A0K9QU54_SPIOL; Uncharacterized protein
STRINGXP_010672689.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-37squamosa promoter binding protein-like 9