PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000147-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 223aa    MW: 23557.6 Da    PI: 9.1083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000147-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-082752227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     k +lC+ +  +  CkyGd+C+FaHg+
  AHYPO_000147-RA 27 KSRLCKKYISGEGCKYGDKCNFAHGE 52
                     678999999966************96 PP
2zf-CCCH38.61.9e-12189214127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC +f++ G C +Gd+C+FaHg+
  AHYPO_000147-RA 189 YKTKLCENFSK-GSCTFGDKCHFAHGE 214
                      9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9812553IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-82556IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-132557IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-52552IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-62752IPR000571Zinc finger, CCCH-type
SMARTSM003221.4E-1195165IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.0E-1595166IPR004088K Homology domain, type 1
PROSITE profilePS5008414.25796160IPR004088K Homology domain, type 1
SuperFamilySSF547916.14E-1596167IPR004088K Homology domain, type 1
CDDcd001057.00E-1598161No hitNo description
PfamPF000132.4E-1198161IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-16185219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.244188215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-9188218IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-8188214IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10189214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMNQPPISRV APPPPPQAIN GVAPSVKSRL CKKYISGEGC KYGDKCNFAH GEWELSKPVA  60
PSFDDPRAMG ASMHGRFPGR NEPPTATGFA GGFGVSATAK ISVDTNLAGA IIGKSGVNSK  120
QICRQTGVKL SIRDHETDPT KRNIELEGTF DQIKIASDMV HDLVANVSAN APHRASGGKP  180
PHGPESNSYK TKLCENFSKG SCTFGDKCHF AHGEAELRKS GV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845235.11e-120zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R02e-69C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9RDP71e-118A0A0K9RDP7_SPIOL; Uncharacterized protein
STRINGXP_010672666.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-59C3H family protein