PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000172-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 250aa    MW: 27996.6 Da    PI: 9.6315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000172-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-06111133123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C++ F+++  L  H++ H
  AHYPO_000172-RA 111 FECHYCNRNFPTSQALGGHQNAH 133
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-6107139No hitNo description
PROSITE profilePS5015711.655111138IPR007087Zinc finger, C2H2
PfamPF139124.3E-7111135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENISSTITL TTSNTTTNNS LDQTHDFMNV DSFSQLPFIR PTPTATTKPS STLANANAAA  60
IRLFGIDFSS SSTTTTTDNS DFSDSNTLTT TATVTTAATA TTTSNENNRK FECHYCNRNF  120
PTSQALGGHQ NAHKRERQHA KRAHLQSAMM TADHTGQRHF YSLANNYPHN YLTNTTRYSY  180
HHHLQRNTTH PPMINGNPLT VWRIPTSGHN YTSSLHRDRS LHPFARSHST NMNYMNLNMN  240
SSHQICRGNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019108008.12e-73PREDICTED: zinc finger protein 8 isoform X1
TrEMBLA0A0K9QWM92e-65A0A0K9QWM9_SPIOL; Uncharacterized protein
STRINGXP_010693856.17e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.12e-30zinc finger protein 8