PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000188-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 188aa    MW: 21037.8 Da    PI: 10.0583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000188-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-183787155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aa+a+++a+  l+g
  AHYPO_000188-RA 37 SKFVGVRQRS-SGRWVAEIKDTT---QKIRMWLGTFETAEAAARAYDEAACLLRG 87
                     79*****999.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.36E-163794No hitNo description
PfamPF008476.0E-123787IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-183795IPR016177DNA-binding domain
SMARTSM003801.1E-3338101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-263895IPR001471AP2/ERF domain
PROSITE profilePS5103219.0323895IPR001471AP2/ERF domain
PRINTSPR003675.0E-73950IPR001471AP2/ERF domain
PRINTSPR003675.0E-76177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MATHNMSKIP INKVTQFKRK PKRSSSSKNN VNANSRSKFV GVRQRSSGRW VAEIKDTTQK  60
IRMWLGTFET AEAAARAYDE AACLLRGFNT KTNFVATHVS SDSPLASRIK DILKNKKPQI  120
NGLVGNYNMV DYSSLLQCHN ISSTLDMANN EVMDMASNGP HEFSDFLHDF NVDSLWDLPF  180
YSSFGSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028780179.13e-45ethylene-responsive transcription factor ERN1
TrEMBLA0A2K1Y1I04e-43A0A2K1Y1I0_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05330.11e-43(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-24related to AP2 11