PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000251-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 655aa    MW: 73658.2 Da    PI: 4.9613
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000251-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.34.1e-24192247155
          G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+ Wt eLH++Fveav++LG  s+k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  AHYPO_000251-RA 192 KARVIWTVELHQKFVEAVNHLGiDSDKIGPKKILDLMNVPWLTRENVASHLQKYRL 247
                      68*******************7447899***************************8 PP
2Response_reg78.62.2e-26211291109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ + +l+++l+k  y ev+++  ++eal+ll++++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  AHYPO_000251-RA  21 VLVVDDDPTWLIILEKMLKKCSY-EVTTCGLASEALKLLRDRKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQH 112
                      89*********************.***************888889**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ ++el +
  AHYPO_000251-RA 113 GACDYLLKPIRMKELKN 129
                      *************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-4318180No hitNo description
SuperFamilySSF521725.69E-3518141IPR011006CheY-like superfamily
SMARTSM004481.2E-3019131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.02620135IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2321129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.69E-2822134No hitNo description
SuperFamilySSF466898.69E-18189251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-27190251IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-21192247IPR006447Myb domain, plants
PfamPF002494.8E-7197246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MVMENGFSSS RSEAFPAGLR VLVVDDDPTW LIILEKMLKK CSYEVTTCGL ASEALKLLRD  60
RKDGFDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELKNI WQHVVRKRMH EVRDIDCIDD RIGTDHFYDG HYGGDQILFK KRKNADNKND  180
EKDSSDPSTT KKARVIWTVE LHQKFVEAVN HLGIDSDKIG PKKILDLMNV PWLTRENVAS  240
HLQKYRLYLN RLRKEDKIES SCGGMRNPDR SPKESGGSFS LQNSSFGQLS DISSELKYPE  300
NQFPVHTVET KPFDCTPESR KLLPLTEHTI PISTENSDSQ QIGNSPFKSL NMSIEHGSDV  360
QFKPDLEPRL KLDTCFNQPA VTILQQHISS DLLEPAPHIS PDLLEPAPHI SPDLLEPTPH  420
IGPGILEPAP HINRDLIESA PLISTDLLDP TPHISTNLLE PTPHISPGPS ISEATQLGLV  480
DVKPLHVKEY DNDTRKITHM ENALDSLSVS NFDSFACVYD MKNQNFSPGN NNIKKQQDQS  540
FTIQPESYLI DTQGLETGFS MASGMKSQMS CQTNEYELRN QILKSEAASG LLGEEMTFHW  600
IPSGDVTLGF DIFSGCNFLE HGFDRSFSHY IPRFDFEYPI DSGEYPLDQS VLFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18188252163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682390.10.0PREDICTED: two-component response regulator ARR11 isoform X1
TrEMBLA0A0K9QRY80.0A0A0K9QRY8_SPIOL; Two-component response regulator
STRINGXP_010682390.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-123response regulator 11