PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000255-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 260aa    MW: 28993.5 Da    PI: 8.6079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000255-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17181214134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +
  AHYPO_000255-RA 181 CLHCGAEKTPQWRAGPKGPKTLCNACGVRYKSGR 214
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.295175211IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-14175237No hitNo description
SMARTSM004011.4E-14175229IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-14178212IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.11E-13180237No hitNo description
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
PfamPF003204.1E-15181215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MESLNTAALM EDFLDFSEED DDETPQTSTN HHRTFSLLRS HSFPEFVEEE ELEWISNKDT  60
FPMVESLVDF MPSTITDNYN GISISNSTNS NSTSHLSPIS VLENSSGGFN GNVSHGRSFN  120
NGNMMMINFP CNFKVPGKAR SKHGRKRRDM LGPQFQHWPV HDKVVKKPGA VKFSSVIGRK  180
CLHCGAEKTP QWRAGPKGPK TLCNACGVRY KSGRLCDEYR PASSPTFSPE IHSNSHRKIV  240
EMWKKKTNNG SRLNPANAG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839064.12e-78GATA transcription factor 1-like isoform X2
TrEMBLA0A0K9RPU06e-77A0A0K9RPU0_SPIOL; Uncharacterized protein
STRINGEOY054293e-62(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-42GATA transcription factor 1