PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000259-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 405aa    MW: 45842.7 Da    PI: 6.6776
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000259-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.92.7e-2871156286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                      W ++e++ Li++rrem++ ++++k++k+lWe++s+kmrergf rsp++C++kw+nl k++kk k++ +++ + + s +++y++++e
  AHYPO_000259-RA  71 WVQDETQNLIALRREMDSLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKQQLGNGcNGNGSAKMSYYKEIE 156
                      **********************************************************************7788899******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.66463127IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-564129IPR009057Homeodomain-like
SMARTSM007176.2E-667129IPR001005SANT/Myb domain
CDDcd122031.22E-3069134No hitNo description
PfamPF138375.5E-2070158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MYISDTNHNP TTTTTTTTKP QSSSIEFSDG DHHNPHDMMI EVVTTHHHHD HHRLPTTGTT  60
SSGPKKRAET WVQDETQNLI ALRREMDSLF NTSKSNKHLW EQISAKMRER GFDRSPTMCT  120
DKWRNLLKEF KKAKQQLGNG CNGNGSAKMS YYKEIEEIIR ERNRCSSSSN VAGYRSPSHN  180
NGGVNHSSKD DPFLQFSDKG IDDATISFGP IEDNGRTALN LERSLDHEEH SLAITAADAV  240
AGGGVPPSFW RETPGNGDGT NSYGGRVITV KWGNYTRRIG IDGTAEAIKD VIRSTFGLRT  300
KRAFWLEDEY QVVRPLDRDM PLGTYALHLD EGVTIKLCHY EESKHISYPS PTISHTEEKT  360
FYTEDDFREF MHRCGWSCLR ELNGYRNIDN LDDLRPDALY RGIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-4365154186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021746780.10.0trihelix transcription factor GT-4-like
SwissprotQ9FX531e-156TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A0K9RAW00.0A0A0K9RAW0_SPIOL; Uncharacterized protein
STRINGXP_010682875.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-143Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]