PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_000293-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

WRKY

Protein Properties

Length: 212aa MW: 24401.6 Da PI: 7.444

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_000293-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.9	8.6e-33	133	191	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H h+ AHYPO_000293-RA 133 LDDGYRWRKYGQKAVKNSKFPRSYYRCTYQGCNVKKQVQRLSNDEGVVVTTYEGSHSHS 191 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-33	118	191	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-29	125	192	IPR003657	WRKY domain
PROSITE profile	PS50811	29.838	128	193	IPR003657	WRKY domain
SMART	SM00774	9.6E-39	133	192	IPR003657	WRKY domain
Pfam	PF03106	1.6E-26	134	190	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEGNSIFSSS TNSSTSSPTN TNFPFSLNQS STLDHHDYHH DHHGSLMMMM MDGDHPPLIN 60 TVHESNHLMM NTHHDDHDHH HGNDNDHHQN KSIYMDNNDN DSNHKLIKKG STVGKKGKKH 120 RYAFQTRSQV DILDDGYRWR KYGQKAVKNS KFPRSYYRCT YQGCNVKKQV QRLSNDEGVV 180 VTTYEGSHSH SIERSTDNFE HILSQMQIYT S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	123	192	7	76	Probable WRKY transcription factor 4
2lex_A	1e-27	123	192	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682719.2	1e-71	PREDICTED: probable WRKY transcription factor 13
TrEMBL	A0A0K9QLB0	7e-65	A0A0K9QLB0_SPIOL; Uncharacterized protein
STRING	XP_010682719.1	5e-72	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-56	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	AHYPO_000293-RA