PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000305-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family SBP
Protein Properties Length: 418aa    MW: 45395.3 Da    PI: 7.772
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000305-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP80.91.7e-25169234178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCs            rsCr+rL++hn+rrrk+++
  AHYPO_000305-RA 169 CCQVEGCSLDLSSAKDYHRKHRVCENHSKSPKVVINGLERRFCQQCS------------RSCRKRLSNHNARRRKPKP 234
                      6*********************************************9............5***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.3E-23165216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.213167232IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-28168237IPR004333Transcription factor, SBP-box
PfamPF031103.7E-18170231IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MNAISVMELN PRSPNLWDWE NYVMYDPKGS EAPKKSQLVE SEIEGIEGFE SASFCSSGGR  60
SDFGTGSDLG YVSSSRSSKS ASVDSSTDRE LKGSQFSFVS NYGTAKASPT IESSAASGES  120
LIALELGKRT YFEDVSGANN VKNIAWTSVP PDSVRKKSKS SPVSTESPCC QVEGCSLDLS  180
SAKDYHRKHR VCENHSKSPK VVINGLERRF CQQCSRSCRK RLSNHNARRR KPKPQVIQFN  240
SMSLTSSLYE SRHSLNFAFD QVPMLQARPG TWDSANDSKV MLAKPGLVST MKSVAYNEHA  300
SHTALQNPTT SEVSSFSTQL MPSKGDFRAL SLLSTNSWGS CDPETSILDH SMHTNHVSLT  360
QPLPSIHTAS LGGPLISSEF WQADQPSSGS ASGSGSGSQP STFKLFEAPN ESNFYHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-181702311184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682751.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682752.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682753.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682754.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010682755.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A0K9QHU31e-163A0A0K9QHU3_SPIOL; Uncharacterized protein
STRINGXP_010682751.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-32squamosa promoter binding protein-like 2