PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000338-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 485aa    MW: 53683.4 Da    PI: 6.2311
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000338-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41e-061756437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     + C+ ++++ ++l+C+ +   lC  C ++ H+       H
  AHYPO_000338-RA 17 NPCDFCNHETAILYCKADTAKLCIACDQHVHSAntlskkH 56
                     67*****************************655555555 PP
2zf-B_box18.73.8e-065998337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....H 37
                      + C+++++++ +  C + + ++C+dC  + H++     H
  AHYPO_000338-RA 59 SPLCDTCGSEPGSVKCSTHNLCICQDCDRTLHQNmiittH 98
                     578*****************************88777777 PP
3CCT621.9e-21436479144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R +a++RYkeK+ktR++eK+irYesRKa+A++R+R+KGrFvk +
  AHYPO_000338-RA 436 RGNAMQRYKEKKKTRRYEKHIRYESRKARADTRKRMKGRFVKIN 479
                      7789*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-81461IPR000315B-box-type zinc finger
CDDcd000212.18E-71861No hitNo description
PROSITE profilePS5011910.041961IPR000315B-box-type zinc finger
CDDcd000217.34E-66091No hitNo description
PfamPF062031.1E-15436477IPR010402CCT domain
PROSITE profilePS5101714.555436478IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MVPSKTIEEQ KLNIIINPCD FCNHETAILY CKADTAKLCI ACDQHVHSAN TLSKKHLRSP  60
LCDTCGSEPG SVKCSTHNLC ICQDCDRTLH QNMIITTHGL NLNPIESFSG CPSALELSIY  120
LGFKNDHQMG LMMDGADLIV PGGNHLVGPT FSWGFNDNEI DDIGMINGSI KKSFNGEKEK  180
DVIKQLLMLQ KKKKDCCSAD GEEERDSLVV PDDEFWLGLE NNTDSNTNYS INDNINHNHN  240
QQNMIQLQQL QLQQEVNLPS LMGLTAAANN VSNVSGPATI GDTMWDPSPT NPSIQIWDFN  300
SGRTRDHEEL GQLDVSNRES DVSFMINSYS SILPGIGLAN SKVVGDMYDM NCSGATEDNR  360
LFNGNIQNPA ASQGPATSES NNLPIISPSS SSVFGKPKSV GSTEIHFMDQ SIYHGAENAL  420
TVVRTKADME MIAQNRGNAM QRYKEKKKTR RYEKHIRYES RKARADTRKR MKGRFVKINN  480
ALIC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467473RKRMKGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745739.11e-174zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A0K9RZ571e-158A0A0K9RZ57_SPIOL; Uncharacterized protein
STRINGXP_010682677.11e-159(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-37B-box type zinc finger protein with CCT domain