PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_000346-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

TCP

Protein Properties

Length: 349aa MW: 37471.8 Da PI: 6.7594

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_000346-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.4	1e-37	50	138	1	88
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 +a+k+++++++hTkv+gR+RR R++a+caar+F+L++eLG+ +d++tieWLlqqa+pa++++tgt++++a+++ + s + s+s+ ssg AHYPO_000346-RA 50 PAPKRTSSKDRHTKVDGRGRRTRMPAQCAARVFQLTRELGHRSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLSLSVRRSGSTVSSG 138 589*******************************************************************9886444444444333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.1E-37	55	229	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.241	57	111	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEDHHHHLHQ NPNPNPNFPL HLLSTGSSIP EQPENHDPTG SIPIPAPKKP APKRTSSKDR 60 HTKVDGRGRR TRMPAQCAAR VFQLTRELGH RSDGETIEWL LQQAEPAVIA ATGTGTIPAN 120 FTSLSLSVRR SGSTVSSGSH TRPLGYSPNY YANNFYVSPP NWMGFSNMLM INGDNHLNDP 180 SRRINNNPFP NNGLGELSSN SSPTLLNLHT SVDSDTCHGK KCASEDDDNE DQEDSDQTLN 240 VDIRSGHVPG SDRSSTTTWA HPCTTTNNGT VASGLHFVNF VNNNTPMDYF SGQPMAGTNG 300 GGSGGSGGFD GQFGMFTGLS NGLRPIVPGG SQTQDRSNNR VDHGDARS*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEDHHHHLHQ NPNPNPNFPL HLLSTGSSIP EQPENHDPTG SIPIPAPKKP APKRTSSKDR  60
HTKVDGRGRR TRMPAQCAAR VFQLTRELGH RSDGETIEWL LQQAEPAVIA ATGTGTIPAN  120
FTSLSLSVRR SGSTVSSGSH TRPLGYSPNY YANNFYVSPP NWMGFSNMLM INGDNHLNDP  180
SRRINNNPFP NNGLGELSSN SSPTLLNLHT SVDSDTCHGK KCASEDDDNE DQEDSDQTLN  240
VDIRSGHVPG SDRSSTTTWA HPCTTTNNGT VASGLHFVNF VNNNTPMDYF SGQPMAGTNG  300
GGSGGSGGFD GQFGMFTGLS NGLRPIVPGG SQTQDRSNNR VDHGDARS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683217.1	1e-127	PREDICTED: transcription factor TCP15
TrEMBL	A0A0K9QRH0	2e-96	A0A0K9QRH0_SPIOL; Uncharacterized protein
STRING	XP_010683217.1	1e-127	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	7e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_000346-RA