PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000361-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 446aa    MW: 49653.4 Da    PI: 7.2812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000361-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.18.5e-19184232259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK  kg+++pr+YYrCt ++Cp         +d +++++tYeg+Hnh+
  AHYPO_000361-RA 184 HDGCHWRKYGQKIAKGNPCPRAYYRCTVQRCP---------QDMSILITTYEGTHNHP 232
                      7**************************77776.........799*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-20168234IPR003657WRKY domain
SuperFamilySSF1182901.83E-20176234IPR003657WRKY domain
PROSITE profilePS5081120.69178234IPR003657WRKY domain
SMARTSM007748.8E-24183233IPR003657WRKY domain
PfamPF031069.6E-16185232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGEVKEENER LKKLLSQIMK EYQSLENQIS SMMQSKKDQS TETNSSISNN NNSIKEDNYD  60
DDQVSLTLGN WSTTNKKHNY DHNNCKKQEN NDRKVEGELE LGLDYCKASD NDPMKDLRFE  120
NSNRELNRDS KEGVNMEAWS SSHDLKAKEN LNSKEGDDQE SLHQPQVKKT RVCIRSRCDS  180
PTIHDGCHWR KYGQKIAKGN PCPRAYYRCT VQRCPQDMSI LITTYEGTHN HPLPLSATAM  240
ASATSAAAAM IKSPSLTSQT PTLTRPLNTS SLGLHSSNFI TTFNNNPSLI STSSHNSHPT  300
ITLDLTLPNS GFSSFDWLSS SSNSSRNSSF LNFSSTPSSS SLPSLDFSKN NNSCSFPINT  360
SWANGYLLPY NNTINNNNTN NNNMRNNNIY QNPNNNPLND TLAAAATKVI ASNPNFQSVL  420
AAAISSYVGN KNNNFEQNKG SQPIDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-14170234174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021746200.11e-170probable WRKY transcription factor 72
TrEMBLA0A0K9S2W71e-152A0A0K9S2W7_SPIOL; Uncharacterized protein
STRINGXP_010683245.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-45WRKY DNA-binding protein 72