PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000402-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 331aa    MW: 36111.1 Da    PI: 10.193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000402-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-13139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  + G+g+W+ I+r + k+Rt+ q+ s+ qky
  AHYPO_000402-RA 139 PWTEEEHRLFLMGLDKVGKGDWRGISRNFVKTRTPTQVASHAQKY 183
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.104.2E-4927IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.9111227IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.997132188IPR017930Myb domain
SuperFamilySSF466894.41E-17134189IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-16135186IPR006447Myb domain, plants
SMARTSM007174.1E-9136186IPR001005SANT/Myb domain
CDDcd001676.41E-9139184No hitNo description
Gene3DG3DSA:1.10.10.608.3E-11139183IPR009057Homeodomain-like
PfamPF002491.9E-10139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAAPPSKSPR TCSQCGNNGH NARTCTELST ATATATATET VETPGIFIFG VRLNATSETY  60
NNSPSPTSPC ISPTSSSSSF VRKSMSMNNL SQYEQQHEYQ KSFLVLDSSN VNDVASGYAS  120
DDALHASGSR TRERKRGIPW TEEEHRLFLM GLDKVGKGDW RGISRNFVKT RTPTQVASHA  180
QKYFLRRSNV NRRRRRSSLF DITTDTMIRS ASEGQLASQD NSTITSQLKS HQSIPIPSPY  240
HPPLRPISAK HVRSIPVPPS SKMACLNLNQ SPTISSTSTY NNTTTSDQYE PLLSLKLSQP  300
PSDKESSRRS RSPPTFGGFS GNGDSIISVA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-32HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849899.11e-120transcription factor MYB1R1
TrEMBLA0A0K9R9Z71e-119A0A0K9R9Z7_SPIOL; Uncharacterized protein
STRINGXP_010683349.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.29e-56MYB_related family protein