PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000463-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 384aa    MW: 43174.8 Da    PI: 5.5523
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000463-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.22.9e-071153238
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     ++r C+ ++e  +  +C+ ++  lC +C  e H+       Ht
  AHYPO_000463-RA 11 QKRLCDFCSESVALVYCKADSAKLCLSCDREVHSTnqlftkHT 53
                     7899******99*********************6677777777 PP
2zf-B_box22.52.4e-075699441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                     + C+ +++  +++ C + ++ lC++C  e+H +       H+++p
  AHYPO_000463-RA 56 QLCDVCDSSAASILCLTEHSVLCQNCDYEHH-SlpgissnHDRRP 99
                     68******99*******************66.6677888888776 PP
3CCT62.31.5e-21334375142
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                      R+ al+RYkeK++tR+FeK+irYesRK  Ae+R R+KGrF+k
  AHYPO_000463-RA 334 RDSALSRYKEKKRTRRFEKHIRYESRKLQAENRTRIKGRFAK 375
                      899**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.481057IPR000315B-box-type zinc finger
SMARTSM003361.8E-131057IPR000315B-box-type zinc finger
PfamPF006431.4E-51154IPR000315B-box-type zinc finger
CDDcd000211.57E-61357No hitNo description
PROSITE profilePS501199.88353100IPR000315B-box-type zinc finger
PfamPF006438.4E-657100IPR000315B-box-type zinc finger
CDDcd000210.0027257100No hitNo description
SMARTSM003360.2758100IPR000315B-box-type zinc finger
PfamPF062031.8E-15334375IPR010402CCT domain
PROSITE profilePS5101714.684334376IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MPDSPLNSTT QKRLCDFCSE SVALVYCKAD SAKLCLSCDR EVHSTNQLFT KHTRFQLCDV  60
CDSSAASILC LTEHSVLCQN CDYEHHSLPG ISSNHDRRPL EGFTGCPSVL DLSAAVGFED  120
FDAKSCVIGD ESDNHGVLFS GLEQENDGFS DFFVWDVPTM VSLDDLIVTT DKTHNFQATV  180
VPPLPKDRNV SCGQHKREIL RQLCELAKAE PSTQQDTNPP IRHHIVADEE KDSIVHQKIR  240
VSQRDDEPNT YEGNEASPYT WCNDADEGGN DVFISSTLSG SHIEESVLFS ETQSSMHCNA  300
NLATNGWNSQ HSVRNESLEF SQRVPIRELL SADRDSALSR YKEKKRTRRF EKHIRYESRK  360
LQAENRTRIK GRFAKLDNRV NQA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021730928.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A0K9RM820.0A0A0K9RM82_SPIOL; Uncharacterized protein
STRINGXP_010696415.11e-177(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-67B-box type zinc finger protein with CCT domain