PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000515-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 671aa    MW: 75342.7 Da    PI: 5.4053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000515-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.8e-14497542454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L
  AHYPO_000515-RA 497 NHMLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 542
                      7999**********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5511193IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.517493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18494554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11497542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.97E-14497542No hitNo description
Gene3DG3DSA:4.10.280.101.8E-17497552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-17499548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MAVADSSNSE LQHMLKSAVQ AVDWTYSLFW KFCPQQGILV WMDGYYNGAI KTRKTVQAID  60
SSAEQAYFQR SQQLRELYES LSAGESNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPLG  120
VGLPGKAYAK GQHVWLTGAN EVASRVFSRA ILAKSAQIQT VVCVPVLDGV VELGHTEKVE  180
EEYSLVQHVK AYFIEHWQHQ LPHSESQVHS KPALSEHSTS NPTASSNYSH IQPPLILAST  240
NLANLSNDDA NDNDGEEEEE ETEVEVEIDS DSETHMHPRS TIKFDDLHYE KGTVTPIEPS  300
KIMHTELCED IIRLDSPGHD NMCNNLDSNY TISPQSHMQL QNRGDYLNAK KTSQRWSLIY  360
QQAQAEAQAD DPILVNNVLQ SPPLGTATEE VSQEDTHYSQ TVSIILQLQS TRSSTTSIAS  420
SNYFSYSSKS AFSQWRSRPD LLYSPLDSTS TSTSTSQCLL KYILFTVPFL HSKSHVNSTN  480
KALTQKKGSV QDDLSANHML AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK  540
QLCKKIQELE TCIKFGEEKE KRKVRVLEGD IDGRMKPRMP AQLSNMLEVS IIESDALVEL  600
QCPYREGLLL DVMITLSDMR LQVTTVQSSL NNSYIVAELR AKVKENVNGQ KPSIIEVKRA  660
LNQVLAQSDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2151937192Transcription factor MYC3
4rqw_B2e-2151937192Transcription factor MYC3
4rs9_A2e-2151937192Transcription factor MYC3
4yz6_A2e-2151937192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1501506ERRRRE
2502507RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684257.10.0PREDICTED: basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGXP_010684257.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-94bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]