PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000558-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 89aa    MW: 10110.5 Da    PI: 11.2982
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000558-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-071158247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47
                     ++WT +E   l+++  q+G+g+W+++ r +      t+ +++++w+++
  AHYPO_000558-RA 11 KPWTLDEVAPLINGMSQFGTGQWTSVKRAFFsfSSHTATDIRDKWRNL 58
                     69***************************999*999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-12464IPR009057Homeodomain-like
PROSITE profilePS5129413.852563IPR017930Myb domain
SMARTSM007173.1E-6961IPR001005SANT/Myb domain
CDDcd116601.06E-131160No hitNo description
SuperFamilySSF466891.0E-131269IPR009057Homeodomain-like
PfamPF139217.3E-71366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MKRSDRRKNS KPWTLDEVAP LINGMSQFGT GQWTSVKRAF FSFSSHTATD IRDKWRNLVK  60
TNIQISKAGK DDHLISIKGV AHNRCQKH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856762.14e-28uncharacterized protein LOC110796042
TrEMBLA0A0K9QGE28e-27A0A0K9QGE2_SPIOL; Uncharacterized protein
STRINGXP_010684090.18e-27(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-15TRF-like 6