PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_000578-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 257aa MW: 29385.4 Da PI: 7.0172

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_000578-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl AHYPO_000578-RA 14 KGPWSPEEDAKLKDYIQKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-23	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.897	9	66	IPR017930	Myb domain
SMART	SM00717	9.4E-13	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-16	14	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.97E-20	15	89	IPR009057	Homeodomain-like
CDD	cd00167	9.69E-10	16	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-5	66	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIQ KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDDEDRIIC SLYASIGSRQ NYDQHVKEKS TLLVFGGDHH HHHDHNHDHN 120 HNQISSCSSD GSITQIANHH QVKCEEQNYA FHHNNVIVNH DHHVVNHHQG KIKSSDADHV 180 HHGIHQDHEM LLRDDEKPSC VVNDTSLLDN YGLEEIKQLI SCTNNINIGN MSGFNYFDHQ 240 SKGEDNKDSK VMYYHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP749920	1e-102	KP749920.1 Salicornia brachiata R2R3 type MYB15 (MYB15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315982.1	4e-62	protein blind-like1
TrEMBL	A0A1S4BYE9	4e-61	A0A1S4BYE9_TOBAC; transcription factor RAX2-like
TrEMBL	A0A2U1LS73	2e-61	A0A2U1LS73_ARTAN; Homeodomain-like protein
STRING	Solyc09g008250.2.1	1e-61	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-57	myb domain protein 36

Link Out ? help Back to Top
Phytozome	AHYPO_000578-RA