PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000642-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HD-ZIP
Protein Properties Length: 84aa    MW: 10037.5 Da    PI: 11.4
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000642-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.4e-211769456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++++t++q+e Le+ Fe++++++ +++ +LA++lgL  rqV vWFqNrRa++k
  AHYPO_000642-RA 17 KRRLTTNQIELLENSFEEEKKLDPDRKMKLARELGLHHRQVAVWFQNRRARWK 69
                     4689************************************************9 PP
2HD-ZIP_I/II933.2e-301775361
      HD-ZIP_I/II  3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEk 61
                     krrl+++q++lLE+sFeee+kL+p+rK++lareLgl+ rqvavWFqnrRAR+k+k+l +
  AHYPO_000642-RA 17 KRRLTTNQIELLENSFEEEKKLDPDRKMKLARELGLHHRQVAVWFQNRRARWKAKKLQH 75
                     9*******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-20872IPR009057Homeodomain-like
PROSITE profilePS5007117.4271171IPR001356Homeobox domain
SMARTSM003893.6E-171475IPR001356Homeobox domain
CDDcd000861.92E-121572No hitNo description
PfamPF000461.7E-181769IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-211877IPR009057Homeodomain-like
PRINTSPR000312.9E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000312.9E-65167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MRASSCNNSN HEEIKIKRRL TTNQIELLEN SFEEEKKLDP DRKMKLAREL GLHHRQVAVW  60
FQNRRARWKA KKLQHLTTSS NRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573ARWKAKKLQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683925.22e-29PREDICTED: homeobox-leucine zipper protein ATHB-22
RefseqXP_021743188.16e-30homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR01e-25ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2Z6ZYE91e-25A0A2Z6ZYE9_9LAMI; Homeobox-leucine zipper protein ATHB-51
STRINGXP_010683925.19e-30(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.16e-28homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]