PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000646-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 519aa    MW: 56604.4 Da    PI: 7.1394
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000646-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.61.6e-18137224187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      +W++  + +L++a++e+ ++l+rg+l++ +Weev++ +  r +  ++s +qCk+k +nl+kryk +++++++    s+s++p+f+++ea
  AHYPO_000646-RA 137 EWSDTAIECLLDAYTEKYTQLNRGNLRGRDWEEVAAIVseRCENQNKSVEQCKNKVDNLKKRYKLERHRMSSA-GVSVSHWPWFKKMEA 224
                      5*************************************666778899************************96.77888********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-21135225No hitNo description
SMARTSM005950.0042145231IPR006578MADF domain
Gene3DG3DSA:3.40.1160.103.6E-67269511IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.264277512IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.7E-54278511IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.06E-94280512No hitNo description
PfamPF006961.8E-21280491IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MASCDDDFSL LNDDHHHLHH FTSHHRYLQP KLSSASGNPI SNDVVKVSST GGGCGSHENG  60
AVYEVNPYES AEFDSVPESE SDPKSSKVGG DATEKRKERE RENQSLPDGS YKKTKSISGA  120
GGLIVPGACE YRKDREEWSD TAIECLLDAY TEKYTQLNRG NLRGRDWEEV AAIVSERCEN  180
QNKSVEQCKN KVDNLKKRYK LERHRMSSAG VSVSHWPWFK KMEAIVGNSL PAKSASDEDK  240
ISGSGGSSGR QQKRYSAGPS GSLGQVNSMK SKSIPNSKWQ RVVFKISGAA LAGNGPHNVD  300
PKVVTLVARE IETVYRLGVQ VAIVIGGRNF FCGDIWMTET GADRSTTYQI NMMANMMNSV  360
LLQSALDKMG VQTRLQTAFV LPEVGEPYNR QRAIRHLEKG RVVIFGGVGG GSGNPLFSTD  420
TTAALRATDL NAQAVLKGTN VDAFYDCNSR NTGITFEHLS YREAASRGNT PMDMMALTFC  480
EENVIPVVVF NLLEPGNISR ALCGEQIGTL IDQAGMIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A7e-5627751148279Uridylate kinase
3nwy_B7e-5627751148279Uridylate kinase
3nwy_C7e-5627751148279Uridylate kinase
3nwy_D7e-5627751148279Uridylate kinase
3nwy_E7e-5627751148279Uridylate kinase
3nwy_F7e-5627751148279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865518.10.0uncharacterized protein LOC110804258 isoform X1
TrEMBLA0A0K9RPR70.0A0A0K9RPR7_SPIOL; Uncharacterized protein
STRINGXP_010683919.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein