PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000659-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 469aa    MW: 52708.6 Da    PI: 5.2578
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000659-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.3e-35651572103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye++ed++l+ +isw ++g+sfvv+d+ efa+ vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  AHYPO_000659-RA  65 FLSKTYELVEDPNLDPIISWGSKGQSFVVWDPVEFARLVLPRNFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGNRHLLK 149
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  AHYPO_000659-RA 150 NIRRRKSH 157
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.6E-5961154IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3661154IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3762152IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3165154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-186588IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-18103115IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340104128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-18116128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1703.7E-4153198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDSDDGLFFP PLIPISSASI PTGFSSIEPS LNFPNFSENF HGEFPEKTHV PQPLERLQEN  60
PIPPFLSKTY ELVEDPNLDP IISWGSKGQS FVVWDPVEFA RLVLPRNFKH NNFSSFVRQL  120
NTYGFRKVDP DKWEFANEGF LRGNRHLLKN IRRRKSHHTQ QLTLFGGSTS ESDIGSEIEK  180
LKTEKSALMH EVVELQQEQR GTAQRVEKVK DRLHASEQRQ KKMVSFLAQV IQNPVFVDRV  240
KEMNEQNTLI SPRTKRRFLK QKPQQGLTNS DTEGEIVRYR PDFEDLRQFP SSEMPISSAP  300
DYQDVLRKAR SGAQTRPSQI GNVSMNGLEA AQEYRDIPGS AGAFPSNYGI GDPFSKSTHA  360
TASTAEADSD YFVSFPEELT KERTFSEFSS GLGNVIKQEG VWSTGFDLSN DISNSSPPLW  420
GNVASYGLSE MGTCPNEFSD VSHLSSLQAG SSEVEIWPGD DSFWSPRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-256215417120Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764808.10.0heat stress transcription factor A-3-like
TrEMBLA0A0K9QJU91e-136A0A0K9QJU9_SPIOL; Uncharacterized protein
STRINGXP_010683874.11e-179(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.18e-95heat shock transcription factor A3