PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000660-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 303aa    MW: 33269.6 Da    PI: 8.3275
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000660-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.4e-17219252134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  AHYPO_000660-RA 219 CMHCAITKTPQWRAGPMGPKTLCNACGVRYKSGR 252
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-661294IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-15213263IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.622213249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14217251IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15217276No hitNo description
CDDcd002021.99E-13218265No hitNo description
PfamPF003204.7E-15219252IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSLMEEIDCG NFFDQIDDLL EVPNDVEKGL VDNRVAGEYN EFPPVFWSEN SPVFSAASNI  60
SASDLSAELS VPLEWLSTFV EDSFASRGLT LEKCQSTSFD KDSPRNQFQT SSPISVLESS  120
SACVTSFSSG HEKRARSKRP RPATFNPLAH LISPTSSVTK TSHHALLAPK PSSADSGNFS  180
ESRPLKKKKI KIVLPSVRIS QNQNENPNEN PTSQPLRKCM HCAITKTPQW RAGPMGPKTL  240
CNACGVRYKS GRLYPEYRPA ASPTFVPSLH SNSHKKVLEM RTKNTEEKPD LLPKCGLTPA  300
CI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137141KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683872.11e-148PREDICTED: GATA transcription factor 8
TrEMBLA0A0K9QV981e-108A0A0K9QV98_SPIOL; GATA transcription factor
STRINGXP_010683872.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-42GATA transcription factor 11