PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000666-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 560aa    MW: 64626.9 Da    PI: 7.4874
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000666-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.21.1e-28123208187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l+L+e+r++++++++++++k+plW+e ++ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  AHYPO_000666-RA 123 RWPRQETLTLLEIRSKLDHKFKEANQKGPLWDELARIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 208
                      8*************************************999*****************************98..55667*******85 PP
2trihelix53.66.1e-17390456166
         trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                      +W + ev  Li++r++me+r+++ g +++ lW+++++km+  g++rs+  Ckekw+n+nk +    +
  AHYPO_000666-RA 390 QWLETEVTRLIQLRTSMESRFQQcGFSEEVLWDDIAAKMAYLGYSRSASVCKEKWDNINKFFHGKDN 456
                      7*********************967899********************************9976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.98116181IPR017877Myb-like domain
SMARTSM007170.24120183IPR001005SANT/Myb domain
PfamPF138378.4E-20122209No hitNo description
CDDcd122031.05E-18123188No hitNo description
PROSITE profilePS500906.783383448IPR017877Myb-like domain
SMARTSM007171.6387450IPR001005SANT/Myb domain
PfamPF138378.9E-13389452No hitNo description
CDDcd122031.48E-19389451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEMEDQYGSI SDLRQFISRA SVTHQFSSYP QPPSQLPSSS DHLFSPHHHH HQRGLSPPHA  60
QPYEMVVLGR PMSSAGIDNI LHHNSAGFHN KDHQNHNFNS ESTTTTANID SGGFDAADAG  120
AARWPRQETL TLLEIRSKLD HKFKEANQKG PLWDELARIM SEEHGYQRTG KKCREKFENL  180
YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GEHHQNQNHP INSDTHQNVP SFHHNNHLSV  240
PTNLGTSNNN HCPNTSISLS NSSEDYDTSS SENDGVGSIE THESKKIKKR GKRNWKAKIK  300
EFIDHQMRKI MEKQEAWLDK MMNTLENREK ERILREQEWR KQETERMERE HKFWASERAW  360
IEARDSALMN ALEKITSSKE NSKDHHDHNQ WLETEVTRLI QLRTSMESRF QQCGFSEEVL  420
WDDIAAKMAY LGYSRSASVC KEKWDNINKF FHGKDNINLI IRDNEGNKKR KENYGEVSIN  480
NTNNNHNHNH NHHNNSNYNE GYGGINGGLF INNHQLMGSY STNCEINEPR LQLNEGSSSP  540
SSHNSNANVN VNVNVNAAGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284292KKIKKRGKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021743338.10.0trihelix transcription factor PTL-like
TrEMBLA0A0K9QYQ70.0A0A0K9QYQ7_SPIOL; Uncharacterized protein
STRINGXP_010683862.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.18e-96Trihelix family protein