PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000667-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 200aa    MW: 21771.2 Da    PI: 4.9335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000667-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-172070155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + ykGVr++k +g+Wv+eIr+p+    + +r++lg++ t e+Aa a++ a+++l+g
  AHYPO_000667-RA 20 PSYKGVRRRK-SGKWVSEIREPK----KpTRIWLGSYPTQEMAAVAYDVAALALKG 70
                     57*****999.7*********83....58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.25E-312080No hitNo description
PfamPF008471.1E-112070IPR001471AP2/ERF domain
PROSITE profilePS5103222.2342178IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-202180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-282180IPR001471AP2/ERF domain
SMARTSM003801.5E-322184IPR001471AP2/ERF domain
PRINTSPR003671.3E-92233IPR001471AP2/ERF domain
PRINTSPR003671.3E-96080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MHHRNQETLE CSKLGGCSRP SYKGVRRRKS GKWVSEIREP KKPTRIWLGS YPTQEMAAVA  60
YDVAALALKG PGTQLNFPDS APSLPVPQSS SPRDIQTAAA SAAAAAGAAA DSMNLEKREC  120
ALVGPNDNND ENAESSKKGK KIEESFVDED LIFDMPNVLV NMAHGMLLSP PRLDITPTYG  180
DDEEDNFDPS NDQNLWNHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-121678972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764795.12e-80ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR06e-46ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0K9RLM42e-73A0A0K9RLM4_SPIOL; Uncharacterized protein
STRINGXP_010684005.16e-74(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.17e-36ERF family protein