PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000672-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 412aa    MW: 44865.5 Da    PI: 8.3698
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000672-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.14.7e-26168211144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  AHYPO_000672-RA 168 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHMHRGRNRSRKPVE 211
                      79***************************************987 PP
2QLQ48.92.1e-1796131237
              QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      +F+ aQ+q+L+ Q+l+y++++a++ vPpeLlq ++k
  AHYPO_000672-RA  96 SFSIAQWQELELQALIYRHMVAGASVPPELLQLVKK 131
                      79******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-995131IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-1296129IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.38696131IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.169168212IPR014977WRC domain
PfamPF088795.4E-22169211IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDFNLKQWRD EQHESEDEQQ QQQPSAKIPR QLILDSPQHH HHHQQQISAL PLFVSAEQSQ  60
PSKVTTHLSS FLDHSSTPTA VPTSTPTFPR VGGRYSFSIA QWQELELQAL IYRHMVAGAS  120
VPPELLQLVK KSLITSSAAS YYLHQYSPHF QPTAAWLQAG YWGKGSMDPE PGRCRRTDGK  180
KWRCSRDVVA GHKYCERHMH RGRNRSRKPV EFPAASVSVA VSADNSLVSS SLNKPSSFVS  240
DTVAADTHFS LSRSGASSLD AFQLNPGSSD RKTLFGLQHE SSASGDGGKS SNSNKVLMHL  300
FDDWPRSENV NGSTLPSSTS LSMSTPGNSS SDFLRLSTGN GEELGRTDGN AGTERGHQQL  360
SWNAGGWGAN QVSSMGGPLA EALRSSSNSS PTSVLHQLRR CSAPDTNFVS V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139776e-39BT013977.1 Lycopersicon esculentum clone 133022R, mRNA sequence.
GenBankHG9754496e-39HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755226e-39HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716845.10.0growth-regulating factor 3-like isoform X2
TrEMBLA0A0K9R2780.0A0A0K9R278_SPIOL; Uncharacterized protein
STRINGXP_010683855.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.17e-55growth-regulating factor 3