PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000714-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 255aa    MW: 29626.1 Da    PI: 8.9459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000714-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-1719103797
                      .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
               B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      p++  k    ++p  f+ ++  g++++  k  +l+d++ + W++k++ +++     +++GW++F+k+++Lk gD++vFk+ g    f  +v+++
  AHYPO_000714-RA  19 PASLKKP---SIPDAFMMKYlgGINEKDAKIAKLKDKTQKIWNIKMSLDGRH----FEDGWQQFCKDHDLKIGDILVFKYLGYaLVF--HVTIY 103
                      5444444...7**********98888889999**************666655....899********************99843444..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-207108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-207108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.82910106IPR003340B3 DNA binding domain
CDDcd100171.19E-1811103No hitNo description
SMARTSM010191.8E-1613106IPR003340B3 DNA binding domain
PfamPF023629.8E-1424100IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-11134233IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-7135232IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.033139236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDTEFYRPSN PHFFVPLIPA SLKKPSIPDA FMMKYLGGIN EKDAKIAKLK DKTQKIWNIK  60
MSLDGRHFED GWQQFCKDHD LKIGDILVFK YLGYALVFHV TIYGNTCCDG LENHVENGHR  120
KRPRDNNDAL LNPSGYPHFQ FTVMRSNLTT GVIRVPLKFA KENKLLNRWC DVEIMDVKGR  180
SMKRKFRRSR TVKDGNHFIC CRPSFYSDYD IKQGDELLLH LISNGPTPVF KFYIIKTIRE  240
DDDEDVWTLL NNGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-30B3 family protein