PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000760-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 339aa    MW: 37706.7 Da    PI: 7.5435
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000760-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.8e-24103147145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk +e+
  AHYPO_000760-RA 103 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMNRGRNRSRKLVES 147
                      79***************************************9987 PP
2QLQ55.71.5e-193267237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                      FT +Q+ +L++Q+l++Ky++a+ PvPp+L+++iq+
  AHYPO_000760-RA 32 LFTLSQWKELEHQALIFKYMLAGHPVPPDLVLPIQN 67
                     6*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-113167IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.813267IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.3E-143366IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.88103147IPR014977WRC domain
PfamPF088797.4E-21104146IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MQESVCLTSG EEARKWEKMN SESTAVSPSL PLFTLSQWKE LEHQALIFKY MLAGHPVPPD  60
LVLPIQNSLS SSSFLHLPSY GYCGRENTLY GIGYGYGYGK KVDPEPGRCR RTDGKKWRCS  120
KEAYPDSKYC ERHMNRGRNR SRKLVESSSC SSSSTTSSCV PALSLNQSEK LPHKFDAFAS  180
ISNPNQTQYE SNSIPYAIPT KHYSRHLEDS KPEAGQHRSL SQCTGSNRSL LMDSSLNNTW  240
SSPSPQLSSL TPSKLIDSSA LHNYHRQSFD NIDFDTSLPV KQSSQSPHSF FELWPNSREA  300
WSGLGDESTN QVGFSTTQLS ISMASSDFST SQQSPQEP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725869.11e-124growth-regulating factor 5-like isoform X2
TrEMBLA0A0K9QCG01e-116A0A0K9QCG0_SPIOL; Uncharacterized protein
STRINGcassava4.1_009580m7e-98(Manihot esculenta)
STRINGXP_004307837.16e-98(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-37growth-regulating factor 5