PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000783-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 642aa    MW: 70400.7 Da    PI: 5.6111
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000783-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.6e-29194247155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  AHYPO_000783-RA 194 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 247
                      79*******************.********************************8 PP
2Response_reg493.4e-17351263109
                      EESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS
     Response_reg   3 ivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 
                      +vdD+p+ + +l+++l+  +y                +++ +D+++ D+ mp+mdG++ll++   e  +lp+i+++a +++  + + +  Ga d
  AHYPO_000783-RA  35 VVDDDPTCLTILEKMLRTCRY--------------EENKNGFDVVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKHVVMKGVTHGACD 113
                      555555555555555554444..............234445**********************6644.8************************* PP

                      EEESS--HHHHHH CS
     Response_reg  97 flsKpfdpeelvk 109
                      +l Kp+ +e+l +
  AHYPO_000783-RA 114 YLIKPVRIEALKN 126
                      *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011023.7945132IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363923.5E-15510639IPR017053Response regulator B-type, plant
SuperFamilySSF521721.21E-2830139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-3030139No hitNo description
SMARTSM004482.0E-1731128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-1433126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.64E-2034131No hitNo description
PROSITE profilePS5129410.896191250IPR017930Myb domain
SuperFamilySSF466894.3E-20192251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-30193252IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-25194247IPR006447Myb domain, plants
PfamPF002499.1E-8196246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MNLGGGLVGS MNLTSSTVNR KSTDDNFPVG LRVLVVDDDP TCLTILEKML RTCRYEENKN  60
GFDVVISDVH MPDMDGFKLL EHVGLEMDLP VIMMSADDSK HVVMKGVTHG ACDYLIKPVR  120
IEALKNIWQH VVRKRKNEYK DIEQSGSWDE GDRSQKQEDA VSSPANDGNW KNSKRKSSED  180
DENEEKDEST SLKKPRVVWS VELHQQFVAA VNQLGIDKAV PKKILELMNV PGLTRENVAS  240
HLQKYRLYLR RLSGVSQHQG GINSSFMPQD TGFSTMSSLG GIDLQTLAAT GQLSAQTLAA  300
YTRIPPTIKP GMSMPFVDQR NLFSFENTKL RYGDPQQAQI SNTSKQMNLL HGIPTSMEPK  360
QIGGLNQSVQ SLGSMNMQAN STSSHQNSSL MMQQMVPQQS RGQILNENVN DQALRIQSSI  420
GQSLQSNGTG SSVISRNSVP YDPVAQAGPV VDYSVNQICD LPSNSYPVGS TPGITSNSEI  480
KVTRGFVGSY DIFSDLQQKP QECYLQNPNM SFGGPSQHVS SVQSSVNVAP SVLVNQSYIS  540
SQKNEQNGNT IPGNPVFLAG LDNQNAGTQN INQNINSVVI NHSSKVKAES VSDLESPGAH  600
FFSEHYSQDD LMSLLKQQQE GIGSDYDYDG YTLDNIPRIG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-23190253164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670914.10.0PREDICTED: two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ91e-167ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0K9RPY90.0A0A0K9RPY9_SPIOL; Two-component response regulator
STRINGXP_010670914.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-151response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]