PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000787-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 139aa    MW: 15316.6 Da    PI: 10.7418
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000787-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.8e-192458135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ Cg++kTplWR gp g+k+LCnaCG+++rkk++
  AHYPO_000787-RA 24 CADCGASKTPLWRGGPAGPKSLCNACGIRNRKKRR 58
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.8E-151868IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5581854IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-121959No hitNo description
CDDcd002022.95E-112358No hitNo description
Gene3DG3DSA:3.30.50.103.2E-152358IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PfamPF003208.7E-172458IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MVDLNDKKSS DPDGEIKENE IKRCADCGAS KTPLWRGGPA GPKSLCNACG IRNRKKRRAI  60
LGLKTKGKKS KKINHNSSSS SSSRRLSSGS LLNQRLRMLG REVMMQRSTV DKQHRWNLGE  120
EEEAAVLLMS LSHGCFYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725414.13e-62GATA transcription factor 15-like
SwissprotQ8LG109e-42GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A0K9RRQ89e-56A0A0K9RRQ8_SPIOL; Uncharacterized protein
STRINGXP_010670911.13e-54(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-35GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]