PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_000907-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

ERF

Protein Properties

Length: 187aa MW: 21691.4 Da PI: 10.1043

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_000907-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.1	5e-09	104	144	4	51
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV+++ +++W A I++ +k+++lg+f +Aa ++++a+ AHYPO_000907-RA 104 RGVYFK--NNKWQAAIKVD-----KKQIHLGTFSLQADAAHLYDRAAF 144 8994..69****4.....5******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	7	1	21	No hit	No description
SMART	SM00380	1.5E-4	104	161	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-8	104	147	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.4E-8	105	156	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MVSLRRRRLM GISTAGVWSS CLPDLTVDYS NTSSLHPIPS DDLNIHVENV NDRSKEIGAS 60 NVSESSHSYD QHNQPNQDST EPEVKRRKQY RRRRIVNEEQ NEKRGVYFKN NKWQAAIKVD 120 KKQIHLGTFS LQADAAHLYD RAAFMCGRET NTELPEEEKK HLKKLKWDEF LAITRRAIIS 180 KRCRRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	88	PEVKRRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696270.1	2e-61	PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBL	A0A0J8B791	3e-60	A0A0J8B791_BETVU; Uncharacterized protein
STRING	XP_010696269.1	3e-60	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13040.2	1e-27	ERF family protein

Link Out ? help Back to Top
Phytozome	AHYPO_000907-RA