PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000943-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 316aa    MW: 36287.2 Da    PI: 7.2007
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000943-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.21.2e-1948136286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W+++e+l Li+a++e++ +l+rg+lk+ +Weev++ + ++ g+   ++s++qC++k+e+l+kry+++k       + + + + yf+ ++
  AHYPO_000943-RA  48 WSHEETLNLIQAYQEKWYSLKRGQLKASQWEEVAITVaARCGLdepSKSATQCRHKIEKLRKRYRAEKLKLPPSFNYNNHPWIYFSLMD 136
                      ***********************************9964445544489********************999888777777888998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.52847108IPR017877Myb-like domain
PfamPF138376.1E-1847138No hitNo description
SMARTSM005956.4E-855143IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSSPPSQTQ STPPSPPTGI PTPNPHPHPT IIQSLSYSPL KKPQPIPWSH EETLNLIQAY  60
QEKWYSLKRG QLKASQWEEV AITVAARCGL DEPSKSATQC RHKIEKLRKR YRAEKLKLPP  120
SFNYNNHPWI YFSLMDQLEK GPLPISAVPP PPHHKNNDPV SNSDDDCDVG FSNLRGFDKR  180
VDGFSRTGRN LGDFRNGSGK INDFRKRMRF SEMEEEEEDM GDEIGEDLEE DMEKKGRKDD  240
DLMGDLATQM RDFAERFVKM EGKKIELMRE TEKLRMEMEN KRMEMILISQ QKTVELISKV  300
FNGSSQKKMK MTSEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854024.11e-115trihelix transcription factor ASIL2, partial
TrEMBLA0A0K9RCJ71e-114A0A0K9RCJ7_SPIOL; Uncharacterized protein
STRINGXP_010685013.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.14e-37Trihelix family protein