PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000961-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 494aa    MW: 54119.8 Da    PI: 6.3843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000961-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16272318455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  AHYPO_000961-RA 272 VHNLSERRRRDRINERMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 318
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-9264322No hitNo description
SuperFamilySSF474593.4E-21265335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.285268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13272318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-21272326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-17274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MNHYVPDFDM ENDHHLISNS SNVTRHKAED EIMELFWQDG EVIAQPQNQR KSPQITAPPL  60
APPQPPQPQQ QQQLYMAEDE MATWLHYPLE DLYSELLCEN PTSPLPPPEL RPSRPSPPLQ  120
TPATTSNFQL FSRMRGGNNL ERSSSLRPGS TVVESNTTPA LATMRSVGEV SSALPITHGG  180
ERLQKGGSSG EVTVSSSSGY SGGPANTRTV NTEEGGGEGV IDEAEKRKKK RKESTPPPST  240
TAGQDLEQHE ADDDEKKHSG GHSSKRSRAA EVHNLSERRR RDRINERMKA LQELIPRCNK  300
SDKASMLDEA IEYLKSLQMQ VQMMSMGCGM VPMMYPGMQQ QYMAPMGMGM GMGMDMGMTR  360
PVMAFPSNVP GSNLPAVPAG AQFGPRYTLP PVNVASVPTP SFPGNQTNNQ GVDVRGGTFP  420
IQRPAMAQLP NMTDPYHQYM AAHQMQMMQM QMQQMQAVQN QSISQPGSSK PSTSKSEPKT  480
GPSTSKSEAK DDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225231KRKKKRK
2226232RKKKRKE
3276281ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684995.11e-169PREDICTED: transcription factor PIF1
TrEMBLA0A0K9QKT21e-130A0A0K9QKT2_SPIOL; Uncharacterized protein
STRINGXP_010684995.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-35phytochrome interacting factor 3-like 5