PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001041-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 280aa    MW: 31852.2 Da    PI: 5.2167
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001041-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.6e-1968117255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp++     r++lg+f t+eeAa+a+++ ++k++g
  AHYPO_001041-RA  68 EYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTPEEAARAYDKEARKIRG 117
                      59*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-3868131IPR001471AP2/ERF domain
PROSITE profilePS5103223.73668125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3268126IPR001471AP2/ERF domain
PfamPF008471.2E-1168117IPR001471AP2/ERF domain
CDDcd000189.51E-3469126No hitNo description
PRINTSPR003672.2E-116980IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2269126IPR016177DNA-binding domain
PRINTSPR003672.2E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MCGGAILADL IPHNKSTGFS CTDFWPDEAF FSTSKNFTNQ HSQLPKPSHS SSGGVQQQKR  60
PKRQRKTEYR GIRQRPWGKW AAEIRDPRKG VRVWLGTFST PEEAARAYDK EARKIRGKKA  120
KVNFPNEDDD YSTNYNTNFY SQNKDFSASS YQEQIPINTF ATQDLDFGYS TNPNQIQKLS  180
SNGLVLNDEN STGYSSESVN SVENLIGMCT NEVIKVEEEK QSEVMKLSEE LMAYENYMKF  240
YQIPYVDGQS SMIDHNPLLG SCQDGDVTMD LWSFDNVQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2269125360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862620.11e-102ethylene-responsive transcription factor ERF073-like isoform X1
TrEMBLA0A0K9R9801e-101A0A0K9R980_SPIOL; Uncharacterized protein
STRINGXP_010684330.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.37e-41ERF family protein