PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001049-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 126aa    MW: 13606.8 Da    PI: 9.4464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001049-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.7e-172357135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+tt+TplWR gp g+k+LCnaCG++y k+++
  AHYPO_001049-RA 23 CACCQTTTTPLWRGGPAGPKSLCNACGIKYHKRRR 57
                     999****************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-111770IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4531752IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.42E-121856No hitNo description
Gene3DG3DSA:3.30.50.105.6E-142256IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.35E-112257No hitNo description
PfamPF003201.7E-142357IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MLDLKEECSV SESQSMNNEL KRCACCQTTT TPLWRGGPAG PKSLCNACGI KYHKRRRALL  60
GLNNGRVDKS IGKKIGSNGS LTMPLKIKVI ASEIRQSNDN FRDKLGEVEQ AAMLLMALSC  120
GSVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684625.12e-52PREDICTED: GATA transcription factor 15 isoform X1
SwissprotQ9FJ103e-26GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0K9QQS01e-35A0A0K9QQS0_SPIOL; Uncharacterized protein
STRINGXP_010684625.16e-52(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.19e-27GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]