PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001078-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 349aa    MW: 37997.6 Da    PI: 6.6558
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001078-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14125189155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng....kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d  ++   +g    +   ++++lg ++++ eAa+a+++a+++ +g
  AHYPO_001078-RA 125 SQYRGVTFYRRTGRWESHIWDnGKQvylGGfdtaHAaaRYIYLGLYDSEVEAARAYDKAALQCNG 189
                      78*******************66669976699862268**********99**********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-8125189IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-8125163IPR016177DNA-binding domain
PROSITE profilePS5103216.147126197IPR001471AP2/ERF domain
CDDcd000189.59E-21126199No hitNo description
SMARTSM003801.5E-24126203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-7126163IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-8164199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-9165197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MLDLNMCIFS PDSNNSEHSC ASNSSIDNNT DSISSNSQNF GYSFDILKNS YTNNGSDDYP  60
LESDHGSASN GFVTKDFFPL SAIPGQGQSQ NHPVMGLVEV RSLITQNHQS QQVKKSRRGP  120
RSRSSQYRGV TFYRRTGRWE SHIWDNGKQV YLGGFDTAHA AARYIYLGLY DSEVEAARAY  180
DKAALQCNGK EAVTNFDPSI YGDELIPGAD SGGGQHTLDL NLGIGTPSFA DTHTKSNIAD  240
SHSFHHDRGG WLNDMATKAT SAVPPVHHGH TFPSDHPSAW SGFNPMFFPL YQTPESEAWR  300
KWAWQMQLQR AHGGVVIPAP VFSTAASSGF PSITTASSAA VGRTHLSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838734.12e-77floral homeotic protein APETALA 2-like
TrEMBLA0A0K9RJI35e-76A0A0K9RJI3_SPIOL; Uncharacterized protein
STRINGXP_010696369.17e-75(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-24AP2 family protein