PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001144-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 154aa MW: 18041.4 Da PI: 9.8156

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001144-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	52	94	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+++++++++ +G++ W++Iar+++ gRt++++k++w+++l AHYPO_001144-RA 52 ITPQEEQIILQLHQIWGNK-WAKIARRLP-GRTDNEIKNYWRTHL 94 59***************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.15E-22	5	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-9	6	37	IPR009057	Homeodomain-like
SMART	SM00717	0.014	7	45	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-10	38	57	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.867	44	98	IPR017930	Myb domain
SMART	SM00717	3.6E-16	48	96	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	53	94	IPR001005	SANT/Myb domain
CDD	cd00167	6.26E-12	53	94	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-21	58	95	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MKEENIRKGP WYQEEDDRLK AFVTLLGLQR SGKSCRLRWL NYLRPYLKHS AITPQEEQII 60 LQLHQIWGNK WAKIARRLPG RTDNEIKNYW RTHLKKKIQI PTSLLNYNTT SSSSSNVFSM 120 ETSSLSDNTN NYLNHIMDSL QEGESVTTIE TSIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-24	5	98	4	108	B-MYB
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696302.1	3e-65	PREDICTED: transcription factor MYB59
Swissprot	Q9SCP1	2e-43	MYB27_ARATH; Transcription factor MYB27
TrEMBL	A0A0J8BAR0	6e-64	A0A0J8BAR0_BETVU; Uncharacterized protein
STRING	XP_010696302.1	1e-64	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	1e-36	myb domain protein 27

Link Out ? help Back to Top
Phytozome	AHYPO_001144-RA

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]