PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001189-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 496aa    MW: 55213.8 Da    PI: 4.7361
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001189-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48.1e-32771842103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT......XTTSEEEEESXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks......kekiweFkhksFkkg 89 
                      Fl+k+y+++ed++l+ +isw  ng+sfvv+d+ efa+ vLp+ Fkh+nf+SFvRQLn+Y  k+++  e +s +      +++ weF+++ F +g
  AHYPO_001189-RA  77 FLSKTYDLVEDPNLDPIISWGFNGQSFVVWDPVEFARLVLPRNFKHNNFSSFVRQLNTYVDKSMNFLEVSSFDkgfrkvDPDKWEFANEGFLRG 170
                      9**********************************************************6555555554433333333349************* PP

                      XXXXXXXXXXXXXX CS
     HSF_DNA-bind  90 kkellekikrkkse 103
                      +k+ll++i+r+ks+
  AHYPO_001189-RA 171 NKHLLKNIHRRKSH 184
                      ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.44E-3472181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5073181IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3574181IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.3E-2877181IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-1377100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-13115127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-13128140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDSDDKLFFP PIPTSSSTPI PTGSSSINQF PDQFYPSGSS PPLNFPIFSE NFSGEFHGND  60
PIPQPLDCLQ GNPIPPFLSK TYDLVEDPNL DPIISWGFNG QSFVVWDPVE FARLVLPRNF  120
KHNNFSSFVR QLNTYVDKSM NFLEVSSFDK GFRKVDPDKW EFANEGFLRG NKHLLKNIHR  180
RKSHHSQQLT LFGGSSSESE IGSEIEKLKK EKSELMQEVI ELQQQQRGTA QRVERVKDRL  240
WASEQRQKQM VSFLAKVIQN PVFVDRLKEM KEQKTLVSPR TKKKFLKQKQ HEGGTSVEGE  300
IVRYGSDFED LKDFPSSDIP MSSCPDYLLE DVLGKSSGAH ITPSPIGDIP MEYMEIPGPI  360
GASSSGVGDP FSKGKQALTS QPEPNPDYLV SFPEELSRER TFPTFSSGIG NMIKQEEVWS  420
MGFDLSTDIS SSSPALWGNI ADYGLPEIGA SCPGEFSDVL DLGALQVGNP GVENWSGDDS  480
QLGHPESKDD VSKNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-217418126129Heat shock factor protein 1
5d5v_B1e-217418126129Heat shock factor protein 1
5d5v_D1e-217418126129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764808.10.0heat stress transcription factor A-3-like
TrEMBLA0A0K9QJU91e-162A0A0K9QJU9_SPIOL; Uncharacterized protein
STRINGXP_010683874.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-91heat shock transcription factor A3