PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001299-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LBD
Protein Properties Length: 210aa    MW: 22693.9 Da    PI: 4.7052
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001299-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.41.9e-27591461100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++hk            +lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+ael
  AHYPO_001299-RA  59 PCAACKILRRRCADKCVLAPYFPPTDPLKFTIAHK------------DLPETQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVSDLQAEL 140
                      7********************************96............99********************************************* PP

           DUF260  95 allkee 100
                      a++++e
  AHYPO_001299-RA 141 AKARAE 146
                      *99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.20858147IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-2659144IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MENIGSDYKQ VVYSPASMTM TTTTTTTTPQ SPQSPNSPPS SVGGGSGMQA NGAPMIMSPC  60
AACKILRRRC ADKCVLAPYF PPTDPLKFTI AHKDLPETQR ADAVSSMVYE ANARLRDPVY  120
GCAGAICQLQ KQVSDLQAEL AKARAEMVNM QCQQANLLAL ICMEMTQSQD IVMPTSPQAP  180
IEISANNNFL NFYDDNNSSL SSIWEPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-33541546118LOB family transfactor Ramosa2.1
5ly0_B3e-33541546118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715798.16e-95LOB domain-containing protein 1-like
SwissprotQ9LQR06e-61LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0K9RV847e-90A0A0K9RV84_SPIOL; Uncharacterized protein
STRINGXP_010669677.18e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-59LOB domain-containing protein 1