PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001335-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 506aa    MW: 56847.9 Da    PI: 9.1932
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001335-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.3e-24119220199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF +   
  AHYPO_001335-RA 119 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysAEPPVQ--TILAKDVHGVTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRA-- 208
                      89****************************986444444..8999*********************************************44.. PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r 
  AHYPO_001335-RA 209 QNGDLFVGIRRP 220
                      67778****985 PP
2Auxin_resp112.63.8e-37263345283
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       + a+ +++FevvY+Prast+eF vk+e v++a++ ++++GmRfkmafetedss++++ +Gtv++ + +dpv+WpnS+Wr+L+
  AHYPO_001335-RA 263 LNLAAIGKPFEVVYYPRASTPEFFVKTETVRSAMQLQWCPGMRFKMAFETEDSSRISWfMGTVSSAQVADPVHWPNSPWRLLQ 345
                      6778899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-31108219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-37114224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-20118219No hitNo description
PfamPF023625.6E-22119219IPR003340B3 DNA binding domain
SMARTSM010191.5E-22119221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126119221IPR003340B3 DNA binding domain
PfamPF065076.1E-32262345IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MMYPNKESSL DSDLWKACAG GMVEMPMVNS KVIYFPQGHI EHAQLNTNSF LIDLKNYPKL  60
NPLIPCRVSE IKYLAHQEND EVYAKIGLEP LKNGTISNFD DGFLRKHDLE NGLEKSASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPKLDY SAEPPVQTIL AKDVHGVTWK FRHIYRGTPR  180
RHLLTTGWSN FVNQKKLVAG DSIVFLRAQN GDLFVGIRRP KRDLLSVPSR GFSPFFRNDD  240
HNPCKVVESL GCSESDESVV RALNLAAIGK PFEVVYYPRA STPEFFVKTE TVRSAMQLQW  300
CPGMRFKMAF ETEDSSRISW FMGTVSSAQV ADPVHWPNSP WRLLQVNWDE PELLQNVKRV  360
NPWSVESVGS MPQIHMSPMS PPRKKQRQSQ VPEIGFPDHV SMAMTYRNGN GGAYSSSGSL  420
LEVPAGVQGA RQAHHFRQFL SDHLNKVNYS SLVSNNGPDL KFLQSKPKIS ENISSFLTMA  480
TNPKEKDDIL TPKFMLFGKL IKIAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-841037351395Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693393.10.0PREDICTED: auxin response factor 18 isoform X1
RefseqXP_010693394.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ653H71e-173ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9QUC10.0A0A0K9QUC1_SPIOL; Auxin response factor
STRINGXP_010693393.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-172auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]