PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001406-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 89aa    MW: 10214.6 Da    PI: 10.5804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001406-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.99.4e-221464154
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                     ++y+GVr+++ +g+++AeIrdp+ ng  +r +lg+++taeeAa+a+++a+ +l+
  AHYPO_001406-RA 14 CKYRGVRRRP-WGKFAAEIRDPKRNG--ARLWLGTYDTAEEAARAYDRAAFALR 64
                     79********.**********98776..**********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-241464No hitNo description
PfamPF008475.5E-161464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-271564IPR001471AP2/ERF domain
PROSITE profilePS5103221.8911575IPR001471AP2/ERF domain
SMARTSM003801.1E-251570IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-201564IPR016177DNA-binding domain
PRINTSPR003671.0E-111627IPR001471AP2/ERF domain
PRINTSPR003671.0E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MESDNNTNRG NSGCKYRGVR RRPWGKFAAE IRDPKRNGAR LWLGTYDTAE EAARAYDRAA  60
FALRVEVVGE IIHFLHHHHL IKKIKEKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2515801477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021768587.19e-37ethylene-responsive transcription factor ERF098-like
SwissprotQ8L9K17e-26ERF99_ARATH; Ethylene-responsive transcription factor 13
SwissprotQ9LTC51e-26ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLK4AK872e-27K4AK87_SETIT; Uncharacterized protein
STRINGXP_010679244.12e-29(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-16ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]